They have a history of making intractable bikes which adhere to some abstruse engineering philosophy, the aforementioned Mick Doohan is on the record as saying one of the most important things he had to do was to stop the Honda engineers from “improving’” the bike. The brutal Honda 500 was reputedly much tamed towards the end of the 500s though, maybe significantly down to Mick and JB, and the Honda 990 bike was a famously great and rideable bike.
I agree they are in strife if MM doesn’t go back to being MM, I am unsure who they can get to guide the development of a more tractable bike, they tried with Lorenzo but their existing bike attempted to kill him, they have burnt their bridges with Dani Pedrosa, Stoner is long retired and suffering from CFS. I can’t say I would be too upset if they blame Puig.