Not so sure about that Kesh....Stoner has been pretty one dimensional throughout his career....ie go REALLY fast and try to win every race, which is why I love watching him as he is a racer in the purest sense - but it is also this philosophy that has cost him dearly when it comes to championships....this year being a prime example and Sachsenring was a very costly mistake that in hindsight he should probably not have made.
Stoner in the past two seasons also had the luxury of riding a far more predictable handling bike and that has allowed him options that weren't previously available while riding the Ducati - it has been this more than anything that has allowed him to better plan his attacks and give him some options re: race stategy....as opposed to getting to the front and pushing at 100% to stay there.
I also think Pedro has had misfortune at the wrong time every year he has competed in the Premiere class...if the luck had have gone his way on a few occasions he could very well have a title by now....even last year he could have walked away with the championship but the luck went Casey's way (Stoner was lucky to get away with a few highsides that could have had serious repercussions for his title chase - this year that run of luck ended).
At the end of the day I just reckon Pedro knew he had better drive up the hill and exploited that advantage to get past Jorge when it mattered...a good race strategy and it all worked out for him. If Dani can pile the pressure back on Jorge he may make a mistake himself (rare these days) and open up a window of opportunity that Pedro can then exploit.
Dani has definitely shown that he wont go down without a fight (moreso this year than before perhaps) and I for one hope he can do it. The three Aliens are all very worthy of a world title...but It is not always decided by skill alone.
I don't mind whether dani or jorge wins the title, both would be well deserved champions.
Stoner had some luck with crashes and injuries/health in 2007 and 2011, not so much in other years. Whatever he might think himself I don't think he had the same focus this year perhaps from the start, certainly once he decided to retire, as he did in his championship years. Perhaps part of his problem is that his riding style requires close to inhuman focus.