Uhhm, the part you're missing evo is the topic is "next generation" electronics. The '06 HRC electrickery is about 3 evolutions away from what was used at the end of the 800cc era. Yamaha is developing the the first evolution (being "evo9" you should get the idea!) of the 1000cc era.
Interesting exerts:
"For the next generation we need a more precise motorcycle model inside the computer and also how to actuate the engine or chassis more effectively. You have to reconsider these areas to make another step."
Another crucial factor will be to create a more intuitive relationship between rider and electronics.
"If a rider can believe in the bike, they can go faster," said Nakajima. "For example, the present traction control or wheelie control is sometimes disturbing the rider's control.
"They want to accelerate, but when the tyre starts to spin sometimes the ECU responds at the wrong moment, or in the wrong way. The timing and 'philosophy' of the control is very important. It is a very critical area."
and;
In pursuit of that goal, and in addition to the changes made for the present electronics, Yamaha has "changed the chassis rigidity. It looks not so different from the outside, but it is quite different in terms of the balance of the rigidity."
The question which begs asking, from my point of view: Is all this electronic development work at Yamaha going to have any benefit other than for this season? Spec ECU may be the way-of-the-world next season...